OpenSim::AbstractTool Class Reference

An abstract class for specifying the interface for an investigation. More...

Inheritance diagram for OpenSim::AbstractTool:

Public Member Functions
virtual	~AbstractTool ()
	Destructor. More...
	AbstractTool ()
	Default constructor. More...
	AbstractTool (const std::string &aFileName, bool aUpdateFromXMLNode=true)
	Construct from file, and an optional GuiModel. More...
	AbstractTool (const AbstractTool &aObject)
	Copy constructor. More...
AbstractTool &	operator= (const AbstractTool &aTool)
	Assignment operator. More...
virtual void	setModel (Model &aModel)
	Set the model to be investigated. More...
virtual Model &	getModel () const
	Get the model to be investigated. More...
bool	getReplaceForceSet () const
void	setReplaceForceSet (bool aReplace)
std::string	getNextAvailableForceName (const std::string prefix="Force") const
const ExternalLoads &	getExternalLoads () const
ExternalLoads &	updExternalLoads ()
void	setExternalLoads (ExternalLoads &el)
bool	modelHasExternalLoads ()
const std::string &	getExternalLoadsFileName () const
void	setExternalLoadsFileName (const std::string &aFileName)
Array< std::string > &	getForceSetFiles ()
void	setForceSetFiles (const Array< std::string > &aForceSetFiles)
int	getOutputPrecision () const
void	setOutputPrecision (int aPrecision)
const AnalysisSet &	getAnalysisSet () const
AnalysisSet &	updAnalysisSet () const
const ControllerSet &	getControllerSet () const
ControllerSet &	updControllerSet () const
const std::string &	getResultsDir () const
	Get Results Directory. More...
void	setResultsDir (const std::string &aString)
double	getInitialTime () const
double	getFinalTime () const
void	setInitialTime (const double aInitialTime)
void	setFinalTime (const double aFinalTime)
double	getStartTime () const
void	setStartTime (const double aStartTime)
int	getMaximumNumberOfSteps () const
void	setMaximumNumberOfSteps (int aMaxSteps)
double	getMaxDT () const
void	setMaxDT (double aMaxDT)
double	getMinDT () const
void	setMinDT (double aMinDT)
double	getErrorTolerance () const
void	setErrorTolerance (double aErrorTolerance)
const std::string &	getModelFilename () const
void	setModelFilename (const std::string &aModelFile)
bool	getSolveForEquilibrium () const
void	setSolveForEquilibrium (bool aSolve)
void	loadModel (const std::string &aToolSetupFileName, ForceSet *rOriginalForceSet=0)
	Load and construct a model based on the property settings of this investigation. More...
void	updateModelForces (Model &model, const std::string &aToolSetupFileName, ForceSet *rOriginalForceSet=0)
	Update the forces applied to a model. More...
void	addAnalysisSetToModel ()
	Adds Analysis objects from analysis set to model. More...
void	addControllerSetToModel ()
void	removeControllerSetFromModel ()
	Remove Analysis objects that were added earlier from analysis set to model. More...
void	removeAnalysisSetFromModel ()
void	setToolOwnsModel (const bool trueFalse)
bool	getToolOwnsModel () const
std::string	getControlsFileName () const
void	setControlsFileName (const std::string &controlsFilename)
virtual bool	run ()=0
void	printResults (const std::string &aBaseName, const std::string &aDir="", double aDT=-1.0, const std::string &aExtension=".sto")
	Print the results of the analysis. More...
bool	createExternalLoads (const std::string &externalLoadsFileName, Model &model)
void	removeExternalLoadsFromModel ()
void	updateFromXMLNode (SimTK::Xml::Element &aNode, int versionNumber) override
	Use this method to deserialize an object from a SimTK::Xml::Element. More...
virtual void	loadQStorage (const std::string &statesFileName, Storage &rQStore) const
Public Member Functions inherited from OpenSim::Object
virtual	~Object ()
	Virtual destructor for cleanup. More...
bool	isEqualTo (const Object &aObject) const
	Equality operator wrapper for use from languages not supporting operator overloading. More...
Object &	operator= (const Object &aObject)
	Copy assignment copies he base class fields, including the properties. More...
virtual bool	operator== (const Object &aObject) const
	Determine if two objects are equal. More...
virtual bool	operator< (const Object &aObject) const
	Provide an ordering for objects so they can be put in sorted containers. More...
void	setName (const std::string &name)
	Set the name of the Object. More...
const std::string &	getName () const
	Get the name of this Object. More...
void	setDescription (const std::string &description)
	Set description, a one-liner summary. More...
const std::string &	getDescription () const
	Get description, a one-liner summary. More...
const std::string &	getAuthors () const
	Get Authors of this Object. More...
void	setAuthors (const std::string &authors)
	Set Authors of this object. More...
const std::string &	getReferences () const
	Get references or publications to cite if using this object. More...
void	setReferences (const std::string &references)
	Set references or publications to cite if using this object. More...
int	getNumProperties () const
	Determine how many properties are stored with this Object. More...
const AbstractProperty &	getPropertyByIndex (int propertyIndex) const
	Get a const reference to a property by its index number, returned as an AbstractProperty. More...
AbstractProperty &	updPropertyByIndex (int propertyIndex)
	Get a writable reference to a property by its index number, returned as an AbstractProperty. More...
bool	hasProperty (const std::string &name) const
	Return true if this Object has a property of any type with the given name, which must not be empty. More...
const AbstractProperty &	getPropertyByName (const std::string &name) const
	Get a const reference to a property by its name, returned as an AbstractProperty. More...
AbstractProperty &	updPropertyByName (const std::string &name)
	Get a writable reference to a property by its name, returned as an AbstractProperty. More...
template<class T >
bool	hasProperty () const
	Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More...
template<class T >
const Property< T > &	getProperty (const PropertyIndex &index) const
	Get property of known type Property<T> as a const reference; the property must be present and have the right type. More...
template<class T >
Property< T > &	updProperty (const PropertyIndex &index)
	Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More...
bool	isObjectUpToDateWithProperties () const
	Returns true if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More...
void	readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber)
	We're given an XML element from which we are to populate this Object. More...
void	updateXMLNode (SimTK::Xml::Element &parent, const AbstractProperty *prop=nullptr) const
	Serialize this object into the XML node that represents it. More...
bool	getInlined () const
	Inlined means an in-memory Object that is not associated with an XMLDocument. More...
void	setInlined (bool aInlined, const std::string &aFileName="")
	Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More...
std::string	getDocumentFileName () const
	If there is a document associated with this object then return the file name maintained by the document. More...
int	getDocumentFileVersion () const
	If there is a document associated with this object then return its version number. More...
void	setAllPropertiesUseDefault (bool aUseDefault)
bool	print (const std::string &fileName) const
	Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More...
std::string	dump () const
	dump the XML representation of this Object into an std::string and return it. More...
virtual bool	isA (const char *type) const
	The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More...
const std::string &	toString () const
	Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More...
PropertySet &	getPropertySet ()
	OBSOLETE: Get a reference to the PropertySet maintained by the Object. More...
const PropertySet &	getPropertySet () const

Static Public Member Functions
Auto-generated functions
static AbstractTool *	safeDownCast (OpenSim::Object *obj)
	For use in MATLAB and Python to access the concrete class. More...
Static Public Member Functions inherited from OpenSim::Object
static void	registerType (const Object &defaultObject)
	Register an instance of a class; if the class is already registered it will be replaced. More...
static void	renameType (const std::string &oldTypeName, const std::string &newTypeName)
	Support versioning by associating the current Object type with an old name. More...
static const Object *	getDefaultInstanceOfType (const std::string &concreteClassName)
	Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. More...
template<class T >
static bool	isObjectTypeDerivedFrom (const std::string &concreteClassName)
	Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. More...
static Object *	newInstanceOfType (const std::string &concreteClassName)
	Create a new instance of the concrete Object type whose class name is given as concreteClassName. More...
static void	getRegisteredTypenames (Array< std::string > &typeNames)
	Retrieve all the typenames registered so far. More...
template<class T >
static void	getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray)
	Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. More...
static bool	PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName, bool printFlagInfo=true)
	Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. More...
static bool	PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName, bool printFlagInfo=true)
	Same as the other signature but the class name and property name are provided as two separate strings. More...
static Object *	makeObjectFromFile (const std::string &fileName)
	Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. More...
static const std::string &	getClassName ()
	Return the name of this class as a string; i.e., "Object". More...
static void	setSerializeAllDefaults (bool shouldSerializeDefaults)
	Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. More...
static bool	getSerializeAllDefaults ()
	Report the value of the "serialize all defaults" flag. More...
static bool	isKindOf (const char *type)
	Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. More...
static void	setDebugLevel (int newLevel)
	Set the amount of logging output. More...
static int	getDebugLevel ()
	Get the current setting of debug level. More...
static Object *	SafeCopy (const Object *aObject)
	Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. More...
static void	RegisterType (const Object &defaultObject)
	OBSOLETE alternate name for registerType(). More...
static void	RenameType (const std::string &oldName, const std::string &newName)
	OBSOLETE alternate name for renameType(). More...

Auto-generated functions <br>
static const std::string &	getClassName ()
	This returns "AbstractTool" More...
AbstractTool *	clone () const override=0
	Create a new heap-allocated copy of the concrete object to which this Object refers. More...
const std::string &	getConcreteClassName () const override=0
	Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More...

Detailed Description

An abstract class for specifying the interface for an investigation.

Author

Frank C. Anderson

Version

1.0

Constructor & Destructor Documentation

~AbstractTool()

virtual OpenSim::AbstractTool::~AbstractTool ( )

virtual

Destructor.

AbstractTool() [1/3]

OpenSim::AbstractTool::AbstractTool

(

)

Default constructor.

AbstractTool() [2/3]

OpenSim::AbstractTool::AbstractTool	(	const std::string &	aFileName,
		bool	aUpdateFromXMLNode = true
	)

Construct from file, and an optional GuiModel.

The object is constructed from the root element of the XML document. The type of object is the tag name of the XML root element.

Parameters

aFileName	File name of the document.
aUpdateFromXMLNode

AbstractTool() [3/3]

OpenSim::AbstractTool::AbstractTool

(

const AbstractTool &

aObject

)

Copy constructor.

Copy constructors for all SimulationTools only copy the non-XML variable members of the object; that is, the object's DOMnode and XMLDocument are not copied but set to NULL. This is because the object and all its derived classes need to establish the correct connection to the XML document nodes. Thus the object needs to reconstruct based on the XML document, not the values of the object's member variables.

There are three proper ways to generate an XML document for a AbstractTool:

1) Construction based on XML file (

See also

AbstractTool(const char *aFileName)). In this case, the XML document is created by parsing the XML file.

2) Construction by AbstractTool(const XMLDocument *aDocument). This constructor explicitly requests construction based on an XML document. In this way the proper connection between an object's node and the corresponding node within the XML document is established. This constructor is a copy constructor of sorts because all essential AbstractTool member variables should be held within the XML document. The advantage of this style of construction is that nodes within the XML document, such as comments that may not have any associated AbstractTool member variable, are preserved.

3) A call to generateXMLDocument(). This method generates an XML document for the AbstractTool from scratch. Only the essential document nodes are created (that is, nodes that correspond directly to member variables.).

Parameters

aObject

Object to be copied.

See also

AbstractTool(const XMLDocument *aDocument)

AbstractTool(const char *aFileName)

Member Function Documentation

addAnalysisSetToModel()

void OpenSim::AbstractTool::addAnalysisSetToModel

(

)

Adds Analysis objects from analysis set to model.

NOTE: Makes copies of analyses. Also, both this tool and the model have ownership of their analysis objects, therefore making a copy is necessary so a single analysis won't be deleted twice.

To avoid leaking when the tool is run from the GUI, pointers to the model's copy of the analyses are kept around so that they can be removed at the end of tool execution. _analysisCopies is used to do this book keeping.

addControllerSetToModel()

void OpenSim::AbstractTool::addControllerSetToModel

(

)

clone()

AbstractTool* OpenSim::AbstractTool::clone ( ) const

overridepure virtual

Create a new heap-allocated copy of the concrete object to which this Object refers.

It is up to the caller to delete the returned object when no longer needed. Every concrete object deriving from Object implements this pure virtual method automatically, via the declaration macro it invokes (e.g., OpenSim_DECLARE_CONCRETE_OBJECT()). Note that the concrete class overrides modify the return type to be a pointer to the concrete object; that still overrides the base class method because the return type is covariant with (that is, derives from) Object.

Implements OpenSim::Object.

Implemented in OpenSim::RRATool, OpenSim::ForwardTool, OpenSim::CMCTool, and OpenSim::AnalyzeTool.

createExternalLoads()

bool OpenSim::AbstractTool::createExternalLoads	(	const std::string &	externalLoadsFileName,
		Model &	model
	)

getAnalysisSet()

const AnalysisSet& OpenSim::AbstractTool::getAnalysisSet ( ) const

inline

getClassName()

static const std::string& OpenSim::AbstractTool::getClassName ( )

inlinestatic

This returns "AbstractTool"

See getConcreteClassName() if you want the class name of the underlying concrete object instead.

getConcreteClassName()

const std::string& OpenSim::AbstractTool::getConcreteClassName ( ) const

overridepure virtual

Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string.

This is the string that is used as the tag for this concrete object in an XML file. Every concrete class derived from Object automatically overrides this method via the declaration macro it uses. See getClassName() to get the class name of the referencing (possibly abstract) class rather than the concrete object.

See also

getClassName()

Implements OpenSim::Object.

Implemented in OpenSim::RRATool, OpenSim::ForwardTool, OpenSim::CMCTool, and OpenSim::AnalyzeTool.

getControllerSet()

const ControllerSet& OpenSim::AbstractTool::getControllerSet ( ) const

inline

getControlsFileName()

std::string OpenSim::AbstractTool::getControlsFileName

(

)

const

getErrorTolerance()

double OpenSim::AbstractTool::getErrorTolerance ( ) const

inline

getExternalLoads()

const ExternalLoads& OpenSim::AbstractTool::getExternalLoads ( ) const

inline

getExternalLoadsFileName()

const std::string& OpenSim::AbstractTool::getExternalLoadsFileName ( ) const

inline

getFinalTime()

double OpenSim::AbstractTool::getFinalTime ( ) const

inline

getForceSetFiles()

Array<std::string>& OpenSim::AbstractTool::getForceSetFiles ( )

inline

getInitialTime()

double OpenSim::AbstractTool::getInitialTime ( ) const

inline

getMaxDT()

double OpenSim::AbstractTool::getMaxDT ( ) const

inline

getMaximumNumberOfSteps()

int OpenSim::AbstractTool::getMaximumNumberOfSteps ( ) const

inline

getMinDT()

double OpenSim::AbstractTool::getMinDT ( ) const

inline

getModel()

virtual Model& OpenSim::AbstractTool::getModel ( ) const

virtual

Get the model to be investigated.

getModelFilename()

const std::string& OpenSim::AbstractTool::getModelFilename ( ) const

inline

getNextAvailableForceName()

std::string OpenSim::AbstractTool::getNextAvailableForceName

(

const std::string

prefix = "Force"

)

const

getOutputPrecision()

int OpenSim::AbstractTool::getOutputPrecision ( ) const

inline

getReplaceForceSet()

bool OpenSim::AbstractTool::getReplaceForceSet ( ) const

inline

getResultsDir()

const std::string& OpenSim::AbstractTool::getResultsDir ( ) const

inline

Get Results Directory.

getSolveForEquilibrium()

bool OpenSim::AbstractTool::getSolveForEquilibrium ( ) const

inline

getStartTime()

double OpenSim::AbstractTool::getStartTime ( ) const

inline

getTimeString()

std::string OpenSim::AbstractTool::getTimeString ( const time_t &  t ) const

protected

Obtain a string of the provided time using asctime().

This function removes the newline that asctime() includes at the end of the string.

getToolOwnsModel()

bool OpenSim::AbstractTool::getToolOwnsModel ( ) const

inline

loadModel()

void OpenSim::AbstractTool::loadModel	(	const std::string &	aToolSetupFileName,
		ForceSet *	rOriginalForceSet = 0
	)

Load and construct a model based on the property settings of this investigation.

loadQStorage()

virtual void OpenSim::AbstractTool::loadQStorage ( const std::string &  statesFileName, Storage &  rQStore  ) const

virtual

modelHasExternalLoads()

bool OpenSim::AbstractTool::modelHasExternalLoads ( )

inline

operator=()

AbstractTool& OpenSim::AbstractTool::operator=

(

const AbstractTool &

aTool

)

Assignment operator.

Returns

Reference to this object.

printResults()

void OpenSim::AbstractTool::printResults	(	const std::string &	aBaseName,
		const std::string &	aDir = "",
		double	aDT = -1.0,
		const std::string &	aExtension = ".sto"
	)

Print the results of the analysis.

Parameters

aBaseName	Basename file to which to print the data.
aDir	Directory to which to print the data into.
aDT	Time interval between results (linear interpolation is used). If not included as an argument or negative, all time steps are printed without interpolation.
aExtension	Extension for written files.

removeAnalysisSetFromModel()

void OpenSim::AbstractTool::removeAnalysisSetFromModel

(

)

removeControllerSetFromModel()

void OpenSim::AbstractTool::removeControllerSetFromModel

(

)

Remove Analysis objects that were added earlier from analysis set to model.

removeExternalLoadsFromModel()

void OpenSim::AbstractTool::removeExternalLoadsFromModel

(

)

run()

virtual bool OpenSim::AbstractTool::run ( )

pure virtual

Implemented in OpenSim::RRATool, OpenSim::ForwardTool, OpenSim::CMCTool, and OpenSim::AnalyzeTool.

safeDownCast()

static AbstractTool* OpenSim::AbstractTool::safeDownCast ( OpenSim::Object *  obj )

inlinestatic

For use in MATLAB and Python to access the concrete class.

Example: cObj = AbstractTool.safeDownCast(obj). This is equivalent to dynamic_cast<AbstractTool*>(obj) in C++.

setControlsFileName()

void OpenSim::AbstractTool::setControlsFileName

(

const std::string &

controlsFilename

)

setErrorTolerance()

void OpenSim::AbstractTool::setErrorTolerance ( double  aErrorTolerance )

inline

setExternalLoads()

void OpenSim::AbstractTool::setExternalLoads ( ExternalLoads &  el )

inline

setExternalLoadsFileName()

void OpenSim::AbstractTool::setExternalLoadsFileName ( const std::string &  aFileName )

inline

setFinalTime()

void OpenSim::AbstractTool::setFinalTime ( const double  aFinalTime )

inline

setForceSetFiles()

void OpenSim::AbstractTool::setForceSetFiles ( const Array< std::string > &  aForceSetFiles )

inline

setInitialTime()

void OpenSim::AbstractTool::setInitialTime ( const double  aInitialTime )

inline

setMaxDT()

void OpenSim::AbstractTool::setMaxDT ( double  aMaxDT )

inline

setMaximumNumberOfSteps()

void OpenSim::AbstractTool::setMaximumNumberOfSteps ( int  aMaxSteps )

inline

setMinDT()

void OpenSim::AbstractTool::setMinDT ( double  aMinDT )

inline

setModel()

virtual void OpenSim::AbstractTool::setModel ( Model &  aModel )

virtual

Set the model to be investigated.

NOTE: setup() should have been called on the model prior to calling this method

setModelFilename()

void OpenSim::AbstractTool::setModelFilename ( const std::string &  aModelFile )

inline

setOutputPrecision()

void OpenSim::AbstractTool::setOutputPrecision ( int  aPrecision )

inline

setReplaceForceSet()

void OpenSim::AbstractTool::setReplaceForceSet ( bool  aReplace )

inline

setResultsDir()

void OpenSim::AbstractTool::setResultsDir ( const std::string &  aString )

inline

setSolveForEquilibrium()

void OpenSim::AbstractTool::setSolveForEquilibrium ( bool  aSolve )

inline

setStartTime()

void OpenSim::AbstractTool::setStartTime ( const double  aStartTime )

inline

setToolOwnsModel()

void OpenSim::AbstractTool::setToolOwnsModel ( const bool  trueFalse )

inline

updAnalysisSet()

AnalysisSet& OpenSim::AbstractTool::updAnalysisSet ( ) const

inline

updateFromXMLNode()

void OpenSim::AbstractTool::updateFromXMLNode ( SimTK::Xml::Element &  objectElement, int  versionNumber  )

overridevirtual

Use this method to deserialize an object from a SimTK::Xml::Element.

The element is assumed to be in the format consistent with the passed-in versionNumber. If there is a file attribute in objectElement it will be ignored; if you want it processed you should call readObjectFromXMLNodeOrFile() instead.

Reimplemented from OpenSim::Object.

Reimplemented in OpenSim::RRATool, and OpenSim::ForwardTool.

updateModelForces()

void OpenSim::AbstractTool::updateModelForces	(	Model &	model,
		const std::string &	aToolSetupFileName,
		ForceSet *	rOriginalForceSet = 0
	)

Update the forces applied to a model.

updControllerSet()

ControllerSet& OpenSim::AbstractTool::updControllerSet ( ) const

inline

updExternalLoads()

ExternalLoads& OpenSim::AbstractTool::updExternalLoads ( )

inline

---

The documentation for this class was generated from the following file:

• OpenSim/Simulation/Model/AbstractTool.h